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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39336935_39340203_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39336935 - 39340203
Intron Length:
3269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GTGAATGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CTATGTTTATCT
Flanking Amino Acid:
RLTSNNQVKQAPSADTLQVE
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
61.9
0.27
1.1
54.5
45.4
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
51.7
0.13
2
72.07
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011230
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044578
39318849 - 39388268
69420