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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39357394_39358609_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39357394 - 39358609
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCCTTATTT
Flanking Amino Acid:
LKSAMEDLEKAISLEPLLLD
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83
0.74
0.8
77.8
35
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
76.5
0.91
1.5
89.27
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011230
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044578
39318849 - 39388268
69420
ENSAPLT00000011689
39329544 - 39388268
58725