Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39365869_39366338_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

39365869 - 39366338

Intron Length:

470

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATTGTTT

5'SS Class:

weak_major

3'SS Sequence:

CCCTTTCTCACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AGTACCTGAACT

Flanking Amino Acid:

KRALQDFSVSVLINDTPENF

Intron Amino Acid Position:

1061

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.1

66.7

38.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.1

0.68

0.7

74.8

27.4

Minor 5ss

-0.1

3.1

42.8

Minor BPS

69.1

0.68

1.5

81.72

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044578

39318849 - 39388268

69420

ENSAPLT00000011689

39329544 - 39388268

58725