Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39366460_39367801_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39366460 - 39367801

Intron Length:

1342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAATCGAA

5'SS Class:

major

3'SS Sequence:

AATCTATTTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

ATTTCCTGAAAT

Flanking Amino Acid:

CDFESVIALNSSVIFAYLNI

Intron Amino Acid Position:

1101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

70.4

35.6

Major BPS

61.3

0.28

30.6

Major PPT

74.2

0.55

0.9

71.1

Minor 5ss

35.7

-1.6

3.3

46.7

48.6

Minor BPS

74.3

0.84

1.5

89.32

34.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044578

39318849 - 39388268

69420

ENSAPLT00000011689

39329544 - 39388268

58725