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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39369356_39370457_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39369356 - 39370457
Intron Length:
1102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTTATTAATT
Flanking Amino Acid:
YPNKSQLRILRGRYLMELKK
Intron Amino Acid Position:
1179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.7
0.89
0.7
84.3
30.3
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
71
0.74
1.5
85.63
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011230
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044578
39318849 - 39388268
69420
ENSAPLT00000011689
39329544 - 39388268
58725