Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39370535_39371365_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39370535 - 39371365

Intron Length:

831

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCACTTTTTATG

Flanking Amino Acid:

CIHQLAEIDEESFKSQPVQQ

Intron Amino Acid Position:

1205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

29.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.9

0.88

0.7

81.2

36.5

Minor 5ss

36.6

-1.5

3.4

45.2

Minor BPS

46.8

-0.4

1.6

48.31

40.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044578

39318849 - 39388268

69420

ENSAPLT00000011689

39329544 - 39388268

58725