Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39375710_39376388_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39375710 - 39376388

Intron Length:

679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCATGTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGAATTATAATT

Flanking Amino Acid:

YRGTLKYQNKTFKAAIEDLS

Intron Amino Acid Position:

1401

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.3

32.8

Major BPS

100

1.24

0.5

100

Major PPT

81.2

0.7

0.9

73.9

40.7

Minor 5ss

33.5

-1.9

3.1

44.4

43.7

Minor BPS

49.8

0.07

1.6

66.87

37.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044578

39318849 - 39388268

69420

ENSAPLT00000011689

39329544 - 39388268

58725