Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39378105_39380536_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39378105 - 39380536

Intron Length:

2432

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACAAAAT

5'SS Class:

major

3'SS Sequence:

CTGTTCATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

CATTGTTTAATG

Flanking Amino Acid:

EVSDYANACEDFKEAALLSP

Intron Amino Acid Position:

1479

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

74.2

Major BPS

81.8

0.79

1.1

34.5

Major PPT

80.8

0.69

0.9

77.9

35.1

Minor 5ss

33.4

-1.9

3.3

48.6

47.1

Minor BPS

55.9

0.05

1.8

59.68

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044578

39318849 - 39388268

69420

ENSAPLT00000011689

39329544 - 39388268

58725