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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3939297_3981314_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3939297 - 3981314

Intron Length:

42018

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTGAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTGAT

U12 Branch Point Sequence:

TTTTTTTGAATA

Flanking Amino Acid:

LEEMTRTEQEDSSCMEKLLS

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

77.9

36.9

Major BPS

72.4

0.56

1.1

63.1

44.4

Major PPT

78.4

0.64

0.9

77.6

35.5

Minor 5ss

44.3

-0.6

3.2

57.9

46.7

Minor BPS

70.5

0.64

1.3

79.42

30.4

Associated Gene:

Gene:

SOX6

Ensembl Gene ID:

ENSAPLG00000008744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025325

3774651 - 4014215

239565

ENSAPLT00000022912

3768142 - 4089655

321514

ENSAPLT00000009100

3768142 - 4089655

321514

ENSAPLT00000026177

3768142 - 4008048

239907