Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39409814_39413222_R

Intron Information:

Intron Rank:

129430

Intron Class:

major

Intron Phase:

Intron Coordinates:

39409814 - 39413222

Intron Length:

3409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TGTCCATTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TGTCCATTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

76.2

39.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

71.8

0.49

66.3

38.6

Minor 5ss

35.6

-1.6

2.7

37.6

Minor BPS

70.6

0.64

1.6

79.59

35.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016839

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040968

39407804 - 39424117

16314