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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39413308_39423557_R

Intron Information:

Intron Rank:
129431
Intron Class:
major
Intron Phase:
Intron Coordinates:
39413308 - 39423557
Intron Length:
10250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
CTTTGTCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79
35.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
86.7
0.82
0.7
85.6
28.6
Minor 5ss
37.6
-1.4
3
44.8
42.9
Minor BPS
45.3
-0.2
2.2
68.25
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016839
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040968
39407804 - 39424117
16314