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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_396689_453597_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
396689 - 453597
Intron Length:
56909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAT
U12 Branch Point Sequence:
TGTCTCTTACCA
Flanking Amino Acid:
IILSDEGKMYGRNELIARYI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
65.6
0.39
1.3
75.1
39.4
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
63.4
0.42
1.6
73.25
38.4

Associated Gene:

Gene:
TEAD1
Ensembl Gene ID:
ENSAPLG00000016417
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040884
355120 - 508802
153683
ENSAPLT00000037311
355120 - 508802
153683
ENSAPLT00000017135
355120 - 508802
153683
ENSAPLT00000042611
355120 - 508802
153683