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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39776779_39780505_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39776779 - 39780505
Intron Length:
3727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
THNNMYAWGQESGAPILTDD
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252