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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39781318_39782679_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39781318 - 39782679
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAGTTCTAAACT
Flanking Amino Acid:
FFQILIYHGETIAQWRKSGY
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.2
0.59
0.8
69.3
35.9
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
60.1
0.4
1.7
72.13
45

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252