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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39782767_39784350_R

Intron Information:

Intron Rank:
17
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
39782767 - 39784350
Intron Length:
1584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCCATT
5'SS Class:
weak_minor
3'SS Sequence:
TTTTAAATCTTAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
YAYSFNGPPEPVLLDSSSIL
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
74.4
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
0.9
71.7
37.9
Minor 5ss
74.3
0.82
1.9
83.7
34.7
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252