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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39784836_39785643_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39784836 - 39785643
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAAAGG
5'SS Class:
major
3'SS Sequence:
CTTTTTACTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTCTTAGCT
Flanking Amino Acid:
RWLDRQLIRLCQKFGEYHKD
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
61.5
43
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.81
0.8
78.2
35
Minor 5ss
32.4
-2
3
37.2
42.1
Minor BPS
74.3
0.84
1.5
88.56
36.2

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252