Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39785798_39786848_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

39785798 - 39786848

Intron Length:

1051

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTATGTTTT

5'SS Class:

weak_major

3'SS Sequence:

TTTAATTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTATTTTAATT

Flanking Amino Acid:

RRIRVTTVARNWADAQTQIQ

Intron Amino Acid Position:

502

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

0.9

83.3

29.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.4

0.82

0.8

36.2

Minor 5ss

63.8

0.47

2.2

75.6

33.8

Minor BPS

70.3

0.71

1.2

80.77

35.1

Associated Gene:

Gene:

SEC23A

Ensembl Gene ID:

ENSAPLG00000011245

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011767

39776296 - 39802547

26252