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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39788069_39790184_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39788069 - 39790184
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
AATCTATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATTATCTAAAAT
Flanking Amino Acid:
NSKGPCVSENEIGTGGTCQW
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.6
32.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
77.3
0.61
0.9
69.7
39.8
Minor 5ss
33.4
-1.9
3.2
39.2
39.9
Minor BPS
56.3
0.28
1.8
76.12
40.2

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252