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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39790266_39791377_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39790266 - 39791377
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTAAAATTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
MGFGGTLEIKTSREVKISGA
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
62.4
0.28
1.2
61.3
43.4
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252