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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39791502_39793242_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39791502 - 39793242
Intron Length:
1741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
TGTTTTTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
LEMKCCPNYTGGYMVMGDSF
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
66.1
41.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.3
0.66
0.9
73.5
41.9
Minor 5ss
39.6
-1.2
3
44.8
43.3
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252