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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39793359_39794148_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39793359 - 39794148
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGGATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCTATGAACT
Flanking Amino Acid:
NAKYVKKGTKHFEALANRAA
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
100
1.24
0.5
100
0
Major PPT
65.3
0.34
1
62.7
42.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
54.8
0.23
1.7
75.51
40.6

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252