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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39794308_39794638_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39794308 - 39794638
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGTCTGTTATT
Flanking Amino Acid:
ALSIAVGLLECTFPNTGARI
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
33.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
86.5
0.82
0.7
81.8
29.9
Minor 5ss
33.1
-1.9
3.4
48.8
46.8
Minor BPS
49.3
0.03
2.3
74.98
42.6

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252