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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39794784_39795486_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39794784 - 39795486
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGC
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ACAATCTAAATC
Flanking Amino Acid:
PQVQQPPPSNRFLQPVQKID
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.7
39.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
88.8
0.87
0.7
81
36.6
Minor 5ss
37.1
-1.5
3.3
50.7
45.8
Minor BPS
48.5
-0.1
1.6
53.5
38.6

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252