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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39795567_39795668_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39795567 - 39795668
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAC
5'SS Class:
major
3'SS Sequence:
TATTTGACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGAAAT
Flanking Amino Acid:
TKDLSAKQLQEMLGLTKVAV
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
66
40.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.6
0.62
0.9
71
39.3
Minor 5ss
37.8
-1.4
3.1
50.8
45.8
Minor BPS
66.9
0.61
1.7
87.91
36.3

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252