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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39796921_39798196_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39796921 - 39798196
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
TGTATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCTTACTG
Flanking Amino Acid:
TTCRAVLNPLCQVDYRAKLW
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
58.7
45.8
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.81
0.8
80
37.5
Minor 5ss
41
-1
3.2
52.9
45.3
Minor BPS
61.5
0.22
1.7
66.07
42.7

Associated Gene:

Gene:
SEC23A
Ensembl Gene ID:
ENSAPLG00000011245
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011767
39776296 - 39802547
26252