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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39805492_39805822_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39805492 - 39805822
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTGATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TACAATTTGATT
Flanking Amino Acid:
RTPQEYLRRVQIEAARCPDV
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
82.2
0.72
0.8
77.5
36.5
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
49.9
0.07
1.5
65.16
39.7

Associated Gene:

Gene:
GEMIN2
Ensembl Gene ID:
ENSAPLG00000012052
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012580
39805370 - 39813081
7712