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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39805908_39807104_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39805908 - 39807104
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
AGTGTTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CTTTCTTTACAC
Flanking Amino Acid:
LRKKQTVNISISGCQPAPEG
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
69.2
0.43
0.9
66.6
40
Minor 5ss
40
-1.1
3
56
42.1
Minor BPS
60.4
0.31
1.7
70.99
40.7

Associated Gene:

Gene:
GEMIN2
Ensembl Gene ID:
ENSAPLG00000012052
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012580
39805370 - 39813081
7712