Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39807195_39808793_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39807195 - 39808793

Intron Length:

1599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAAAAT

5'SS Class:

major

3'SS Sequence:

TTTAATTACTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTGTTTTAATT

Flanking Amino Acid:

QVANFSAVRQSLNKHRSHWR

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

74.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

75.7

0.58

40.3

Minor 5ss

33.4

-1.9

3.3

48.6

47.1

Minor BPS

74.3

0.84

1.2

86.64

33.8

Associated Gene:

Gene:

GEMIN2

Ensembl Gene ID:

ENSAPLG00000012052

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012580

39805370 - 39813081

7712