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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39809138_39809738_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39809138 - 39809738
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GACTATTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTCTTATAAAT
Flanking Amino Acid:
NENLGIDYMKVGFPPLLSIV
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.9
0.61
0.9
73
41.5
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
51.3
0.12
1.7
72.29
38

Associated Gene:

Gene:
GEMIN2
Ensembl Gene ID:
ENSAPLG00000012052
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012580
39805370 - 39813081
7712