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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39812289_39812616_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39812289 - 39812616
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCTCCACT
Flanking Amino Acid:
ALNLIICLVSRYFDQRDLAD
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73
0.52
0.8
67.5
33.8
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
56.3
0.28
2
81.4
40.1

Associated Gene:

Gene:
GEMIN2
Ensembl Gene ID:
ENSAPLG00000012052
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012580
39805370 - 39813081
7712