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Intron Name: Anas_platyrhynchos_platyrhynchos_5_3981526_3999241_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3981526 - 3999241

Intron Length:

17716

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

AGTAGCTTATAT

Flanking Amino Acid:

DGVISAQHRMESESNKLCSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.8

80.1

28.4

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

89.6

0.89

0.7

84.7

30.1

Minor 5ss

39.5

-1.2

2.9

49.4

41.4

Minor BPS

46.4

-0.1

2.1

65.52

44.3

Associated Gene:

Gene:

SOX6

Ensembl Gene ID:

ENSAPLG00000008744

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025325

3774651 - 4014215

239565

ENSAPLT00000022912

3768142 - 4089655

321514

ENSAPLT00000009100

3768142 - 4089655

321514

ENSAPLT00000026177

3768142 - 4008048

239907