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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39816094_39816567_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
39816094 - 39816567
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTTT
5'SS Class:
weak_major
3'SS Sequence:
ACTTTTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTCTTTAAAA
Flanking Amino Acid:
GKQYLEHAPKFLAFTCGLIR
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
69.9
43.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
0.9
78.2
34.7
Minor 5ss
64.9
0.5
2.7
82.4
37.3
Minor BPS
71.9
0.68
1.3
74.83
36.6

Associated Gene:

Gene:
TRAPPC6B
Ensembl Gene ID:
ENSAPLG00000012319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012852
39815399 - 39817363
1965