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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39824758_39826478_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39824758 - 39826478
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TTATTTATCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTTCTTTATTT
Flanking Amino Acid:
KQESTVATERQKRRQEIEQK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
70.9
40.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.8
0.65
0.8
78.5
34.4
Minor 5ss
36
-1.6
3
42.4
44.5
Minor BPS
65.9
0.58
1.5
78.88
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042593
39822481 - 39869364
46884
ENSAPLT00000028355
39822481 - 39869364
46884