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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39826635_39826720_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39826635 - 39826720
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
LEQKVELAQLQEEWNEHNAK
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.9
0.74
0.8
80.9
36.2
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028355
39822481 - 39869364
46884
ENSAPLT00000042593
39822481 - 39869364
46884
ENSAPLT00000036054
39825634 - 39869364
43731