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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39826860_39827886_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39826860 - 39827886
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTATTTTATCC
Flanking Amino Acid:
LMEDSQKKMNALFESRRNEF
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.8
74.1
36.3
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
56.8
0.19
1.6
67.21
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042593
39822481 - 39869364
46884
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028355
39822481 - 39869364
46884