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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39839145_39839476_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39839145 - 39839476
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AGCATTTTAAAA
Flanking Amino Acid:
IVEEVEVLTKETDFLCLDGD
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.6
0.69
0.8
78.4
35.6
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
51
0.03
1.4
55.95
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028355
39822481 - 39869364
46884
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000042593
39822481 - 39869364
46884
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028359
39836380 - 39869364
32985