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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39844189_39845088_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39844189 - 39845088
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATCTCCTTAGTT
Flanking Amino Acid:
CRSALEGARRAVASLPEEMR
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
70.6
0.73
1.5
82.25
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043198
39843390 - 39869364
25975