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Intron Name: Anas_platyrhynchos_platyrhynchos_5_39845221_39846893_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39845221 - 39846893

Intron Length:

1673

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

CTTTTTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTTTTTATTT

Flanking Amino Acid:

FLFLYRSYQSVRSRLYVGRE

Intron Amino Acid Position:

659

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

79.3

34.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

90.6

0.91

0.7

89.1

25.9

Minor 5ss

40.8

-1

3.4

63.8

41.6

Minor BPS

63.6

0.51

1.5

78.46

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012614

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028359

39836380 - 39869364

32985

ENSAPLT00000028355

39822481 - 39869364

46884

ENSAPLT00000043198

39843390 - 39869364

25975

ENSAPLT00000013258

39836380 - 39869364

32985

ENSAPLT00000042593

39822481 - 39869364

46884

ENSAPLT00000036054

39825634 - 39869364

43731