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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39847109_39847477_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39847109 - 39847477
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCTGACATAAAG
Flanking Amino Acid:
LEKLSLCKKEFEDLESSLKD
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
45.9
-0.4
2
54.59
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028359
39836380 - 39869364
32985
ENSAPLT00000028355
39822481 - 39869364
46884
ENSAPLT00000043198
39843390 - 39869364
25975
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000042593
39822481 - 39869364
46884