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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39847550_39848308_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39847550 - 39848308
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
CAATTTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTGTTTTAACT
Flanking Amino Acid:
KESTDAAFFEETHEKLNKSN
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
64.9
0.34
1
62.7
42.9
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
71.4
0.75
1.4
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028359
39836380 - 39869364
32985
ENSAPLT00000028355
39822481 - 39869364
46884
ENSAPLT00000043198
39843390 - 39869364
25975
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000042593
39822481 - 39869364
46884