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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39848420_39848768_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39848420 - 39848768
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TAATAATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATATTAAAAACT
Flanking Amino Acid:
KSKQSENDNLVAEIEERLES
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
78.6
29.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75
0.56
1
70.8
43.8
Minor 5ss
31.8
-2.1
3
37.3
41.2
Minor BPS
46.1
-0.2
2.1
69.26
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028359
39836380 - 39869364
32985
ENSAPLT00000028355
39822481 - 39869364
46884
ENSAPLT00000043198
39843390 - 39869364
25975
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000042593
39822481 - 39869364
46884