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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39848841_39852996_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39848841 - 39852996
Intron Length:
4156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATCACACTAATC
Flanking Amino Acid:
AKSVQSQVDELLKEAEGWDE
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
86.3
0.82
0.6
85.1
22.3
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
47.4
-0.2
1.9
59.68
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028359
39836380 - 39869364
32985