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Intron Name: Anas_platyrhynchos_platyrhynchos_5_39849355_39852996_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39849355 - 39852996

Intron Length:

3642

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAGGTTCT

5'SS Class:

major

3'SS Sequence:

TTTCCCTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ATCACACTAATC

Flanking Amino Acid:

NCHLQESEKQLLKEAEGWDE

Intron Amino Acid Position:

816

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.2

0.64

75.2

35.7

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

86.3

0.82

0.6

85.1

22.3

Minor 5ss

43.2

-0.8

3.1

39.8

Minor BPS

47.4

-0.2

1.9

59.68

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012614

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036054

39825634 - 39869364

43731

ENSAPLT00000028355

39822481 - 39869364

46884

ENSAPLT00000013258

39836380 - 39869364

32985

ENSAPLT00000043198

39843390 - 39869364

25975

ENSAPLT00000042593

39822481 - 39869364

46884