About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39859473_39860417_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39859473 - 39860417
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTGAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTTCTTGAAAG
Flanking Amino Acid:
SHEKKAHDNWLTARAAERHL
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
35
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
70.6
0.46
1.1
74.3
34.3
Minor 5ss
41
-1
2.7
45.9
42.3
Minor BPS
60.3
0.19
1.6
65.38
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028355
39822481 - 39869364
46884
ENSAPLT00000043198
39843390 - 39869364
25975
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000042593
39822481 - 39869364
46884
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028359
39836380 - 39869364
32985