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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39861237_39861592_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39861237 - 39861592
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TTAACTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTAACT
Flanking Amino Acid:
LDVPVRPFGREHSPYGPSPM
Intron Amino Acid Position:
1107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.8
0.56
1
65.7
45
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
78.3
0.97
1.2
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028359
39836380 - 39869364
32985
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000043198
39843390 - 39869364
25975
ENSAPLT00000042593
39822481 - 39869364
46884
ENSAPLT00000036054
39825634 - 39869364
43731