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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39861237_39863636_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39861237 - 39863636
Intron Length:
2400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTCTTCAATT
Flanking Amino Acid:
LDVPVRPFGRGSRGPGSTVM
Intron Amino Acid Position:
1249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.3
0.55
0.9
75.7
33.1
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
72.7
0.79
1.4
86.57
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028355
39822481 - 39869364
46884