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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39861725_39863636_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39861725 - 39863636
Intron Length:
1912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAATTC
5'SS Class:
major
3'SS Sequence:
TTTCTTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATTTCTTCAATT
Flanking Amino Acid:
PMLPGGGGGRGSRGPGSTVM
Intron Amino Acid Position:
1151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
69.5
36.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.3
0.55
0.9
75.7
33.1
Minor 5ss
40.8
-1
3.4
59.1
45.6
Minor BPS
72.7
0.79
1.4
86.57
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000043198
39843390 - 39869364
25975
ENSAPLT00000042593
39822481 - 39869364
46884
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028359
39836380 - 39869364
32985