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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39865298_39867705_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39865298 - 39867705
Intron Length:
2408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ACTTGTTTAACT
Flanking Amino Acid:
TYNVQSFDKTDGQTSSENSP
Intron Amino Acid Position:
1248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
80.6
33.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.9
0.65
0.9
73
36.5
Minor 5ss
32.6
-2
3.4
48
47.7
Minor BPS
68.1
0.65
1.7
81.74
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012614
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036054
39825634 - 39869364
43731
ENSAPLT00000028359
39836380 - 39869364
32985
ENSAPLT00000028355
39822481 - 39869364
46884
ENSAPLT00000043198
39843390 - 39869364
25975
ENSAPLT00000013258
39836380 - 39869364
32985
ENSAPLT00000042593
39822481 - 39869364
46884