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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39902700_39902999_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39902700 - 39902999
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
CTTTCTTCGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGGTTTGACT
Flanking Amino Acid:
TSECNRLMLPDDERDLTSPS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
74.3
0.55
0.9
69.8
36.7
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
61.1
0.43
1.9
82.48
39.6

Associated Gene:

Gene:
ZNF410
Ensembl Gene ID:
ENSAPLG00000013581
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014156
39902519 - 39910639
8121