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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_39903234_39903538_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39903234 - 39903538
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAGCT
Flanking Amino Acid:
SFILLNLTRAGLGSPAEHLV
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.9
0.6
84.6
30.4
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
60.9
0.42
2
86.75
38.4

Associated Gene:

Gene:
ZNF410
Ensembl Gene ID:
ENSAPLG00000013581
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014156
39902519 - 39910639
8121